The software being within 5hp of a pro-stock engine is very impressive. The reason I asked about how well the software works is because it seemed to me that the amount of power you were seeing for the turbocharged engine was low, but that might have something to do with the efficiency of a two valve engine.
A stock Hayabusa pulls about 153hp at the back wheel but with 16 pounds of boost I've seen 300 rear wheel HP on mine so the correlation of pressure to power increase at that point is almost linear.
Regarding the inputs into your turbocharger field I would guess that the defaults are a reasonable starting point. Can you select a particular turbo from a list or do you have to put in all the specifics? If you have to put in the specifics it will be kind of a pain looking them up.
Here's an article I found that's a good starting point for understanding some of the fields in that input window: Here's a page with lots of different maps to look at:
Once you understand some of the basics of reading a turbo map then you can pull some of the numbers out - I assume that where it says island specs it is referring to the island of greatest efficiency - on the map in the article the middle of that island is at 20 pounds of air per minute which would work out to 289 cfm - very close to what is already entered - the pressure ratio of 1.8 is about the same too. I'm guessing that the maximum flow is the same as the choke area on the example which would be about 580 cfm on the example page. I'm not sure how they figure the surge cfm on your software because it is dependent on the pressure ratio.
I'd be interested in seeing what effects your software shows for different amounts of overlap and intake closing points with a turbo just to see how sensitive they are to those things.